Assay information: Vf_Mt3g100500_001

Narrative

This KASP assay belongs to a set of 653 validated assays designed map to a single locus in the published Medicago truncatula transcriptome v3.5 (www.medicagohapmap.org). The marker name refers to the annotation of the corresponding M. truncatula contig or pseudogene. The assay has been integrated into a consensus map with 34 out of 67 markers published in Cottage et al., Mol Breeding (2012). Details in Webb et al.,Plant Biotechnology Journal (2015).

References

Webb, A., Cottage, A., Wood, T., Khamassi, K., Hobbs, D., Gostkiewicz, K., White, M., Khazaei, H., Ali, M., Street, D., Duc, G., Stoddard, F., Maalouf, F., Ogbonnaya, F. C., Link, W., Thomas, J. and O'Sullivan, D. M. (2015) A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.). Plant Biotechnology Journal. ISSN 1467-7652 (In Press)

Map

2015 consensus map, AlbusxBPL10markers

Linkage Group

Vf_Chr_2 B

Chromosome

unknown

cM position

96.72

Assay ID

1302591462

Assay Name

Vf_Mt3g100500_001

Reference Allele Sequences

Sequence ID	Allele	Phenotype
contig24668	C	NA
contig08591	T	NA

Polymorphism sequence

GCTTCGGGCCAGGCTTTTAACATCGGCAACTACGTTGTCCGTGTCAAAATCGGAA
CACCAGGTCAACTTCTGTTCATGGT[Y]CTTGACACAAGTACCGATGAGGCTTTT
GTCCCTTCCTCCGGCTGCACCGGTTGTTCCGC

Reference allele sequence alignment

Validation plot

Genotype data

Accession Name	Other Ref	Genotype call (with filter)	Reference sample of known genotype
	NV153_1DW_S3A2	C:C
	NV639_1_HEDIN	T:T
	NV643_3_S2	C:C
	NV644_1_KASZTEL	C:C
	NV648_2_S3B2_7	T:T
	NV656_3_S2A2_9	T:T
	NV657_26	T:T
	NV658_2_CGN0771	C:C
	NV662_1_VF136	C:C
	NV713_1_COTEDOR	T:T
	NV714_1_HIVERNA	T:T
	NV715_1_WEBO	T:T
	NV716_1_WIBO	T:T
	NV717_1_L79_79	C:C
	NV718_1_L977_88	T:T
	NV719_1_L979_S1	C:C
	NV720_1_BOURDON	C:C
	NV721_1_ARRISOT	C:C
	NV722_1_BANNER	C:C
	NV723_1_BULLDOG	T:T
	NV724_1_PIETRAL	C:C
	NV725_1_GIZA3_2	C:C
	NV726_1_GIZA402	C:C
	NV727_1_BPL4628	C:C
	NV728_1_TW	T:T
	NV729_1_VF6	C:C
	NV730_1_I4347_4	T:T
	NV731_1_I4347_3	T:T
	NV732_1_BPL710	?
	NV733_1_NA112	T:T
	NV734_1_ILB938	C:C
	NV735_1_MELODIE	T:T
	NV736_1_AURORA	C:C

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Assay information: Vf_Mt3g100500_001