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Assay information: Vf_Mt4g061010_001

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Narrative This KASP assay belongs to a set of 653 validated assays designed map to a single locus in the published Medicago truncatula transcriptome v3.5 (www.medicagohapmap.org). The marker name refers to the annotation of the corresponding M. truncatula contig or pseudogene. The assay has been integrated into a consensus map with 34 out of 67 markers published in Cottage et al., Mol Breeding (2012). Details in Webb et al.,Plant Biotechnology Journal (2015).
References Webb, A., Cottage, A., Wood, T., Khamassi, K., Hobbs, D., Gostkiewicz, K., White, M., Khazaei, H., Ali, M., Street, D., Duc, G., Stoddard, F., Maalouf, F., Ogbonnaya, F. C., Link, W., Thomas, J. and O'Sullivan, D. M. (2015) A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.). Plant Biotechnology Journal. ISSN 1467-7652 (In Press)
Map 2015 consensus map, AlbusxBPL10markers
Linkage Group Vf_Chr_6 B
Chromosome unknown
cM position 145.4
Assay ID 1649504412
Assay Name Vf_Mt4g061010_001
Reference Allele Sequences
Sequence ID Allele Phenotype
contig00678 T NA
contig12937 C NA
Polymorphism sequence TTTACCTTGTTGTTATGTTCTGCGTCATCGCCGTGCTCATCGGGTTTATAATCTT
TGC[Y]TATGTTGTAACGGATAAAGGGTCTGGAAGAARKCTTGTGAATAAAGGCT
ACTTGGATTATTATCTTGAAGATTATTCTGGCTGGTTGGA
Reference allele sequence alignment
Validation plot
Genotype data
Accession Name Other Ref Genotype call (with filter) Reference sample of known genotype
NV153_1DW_S3A2 C:C
NV639_1_HEDIN C:C
NV643_3_S2 T:T
NV644_1_KASZTEL C:C
NV648_2_S3B2_7 C:C
NV656_3_S2A2_9 C:C
NV657_26 T:T
NV658_2_CGN0771 C:C
NV662_1_VF136 C:C
NV713_1_COTEDOR C:C
NV714_1_HIVERNA C:C
NV715_1_WEBO C:C
NV716_1_WIBO C:C
NV717_1_L79_79 C:C
NV718_1_L977_88 C:C
NV719_1_L979_S1 C:C
NV720_1_BOURDON T:T
NV721_1_ARRISOT C:C
NV722_1_BANNER C:C
NV723_1_BULLDOG C:C
NV724_1_PIETRAL C:C
NV725_1_GIZA3_2 C:C
NV726_1_GIZA402 C:C
NV727_1_BPL4628 C:C
NV728_1_TW C:C
NV729_1_VF6 C:C
NV730_1_I4347_4 C:C
NV731_1_I4347_3 C:C
NV732_1_BPL710 C:C
NV733_1_NA112 C:C
NV734_1_ILB938 C:C
NV735_1_MELODIE ?
NV736_1_AURORA C:C

 

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