Assay information: Vf_Mt8g091280_001

Narrative

This KASP assay belongs to a set of 653 validated assays designed map to a single locus in the published Medicago truncatula transcriptome v3.5 (www.medicagohapmap.org). The marker name refers to the annotation of the corresponding M. truncatula contig or pseudogene. The assay has been integrated into a consensus map with 34 out of 67 markers published in Cottage et al., Mol Breeding (2012). Details in Webb et al.,Plant Biotechnology Journal (2015).

References

Webb, A., Cottage, A., Wood, T., Khamassi, K., Hobbs, D., Gostkiewicz, K., White, M., Khazaei, H., Ali, M., Street, D., Duc, G., Stoddard, F., Maalouf, F., Ogbonnaya, F. C., Link, W., Thomas, J. and O'Sullivan, D. M. (2015) A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.). Plant Biotechnology Journal. ISSN 1467-7652 (In Press)

Map

2015 consensus map, AlbusxBPL10markers

Linkage Group

Vf_Chr_6 B

Chromosome

unknown

cM position

49.99

Assay ID

1549907811

Assay Name

Vf_Mt8g091280_001

Reference Allele Sequences

Sequence ID	Allele	Phenotype
contig01214	T	NA
contig00817	C	NA

Polymorphism sequence

GTTGATATTTCGTTGAGTCCACGTGTCAATGCTGTCAAGCCTTCGAGGAC[Y]GT
GGCTATAACTGATCAAGCTACTGCTCTTGTTCAAGCTGGTGTTCCTGTTATTCGC
TTGGCGGCTGGTGAGCCTGATTTCGATACACC

Reference allele sequence alignment

Validation plot

Genotype data

Accession Name	Other Ref	Genotype call (with filter)	Reference sample of known genotype
	Verde_Bonita
	VF27
	ig11749-5/S1
	ig11903-1/S2
	ig11903-1/S3
	ig12137-2/S2
	ig12137-2/S3
	ig11276-1/S1
	ig12159-1/S1
	ig12159-1/S2
	ig12263-1/S1
	ig12263-1/S2
	ig12613-2/S2
	ig12613-2/S3
	ig12658-1/S1
	ig12658-1DW/S2
	ig12747-1/S1
	ig12747-2DW/S1
	ig12747-2/S2
	ig13004-1/S1
	ig11290-1/S1
	ig11290-1/S2
	ig14096-5/S1
	ig14189-1/S2
	ig14189-1/S3
	ig14197-2/S1
	ig14197-2/S2
	ig70718-5/S1
	ig72355-5/S1
	ig72423-1/S1
	ig72423-1/S2
	ig72495-1/S2
	ig124126-1/S1
	ig124126-1/S2
	ig124126-2/S1
	ig124126-2/S2
	ig124213-3/S1
	ig124300-1/S1
	ig124301-1/S1
	ig11531-5/S1
	ig130596-2/S1
	ig130596-2/S2
	ig130638-1/S1
	ig130674-1/S1
	ig130734-2/S1
	ig131693-1/S1
	ig131693-1/S2
	ig132660-2/S2
	ig132813-2/S1
	Borington Bulk-1
	Borington Bulk-1/S1
	V219-4/S1
	V220-3/S1
	NA1-2/S1
	NA12-1/S1
	Vf172-1
	Vf172-1/S1
	GLV45-2/S1
	Hedin/2-1
	Hedin/2-1/S1
	Maris Bead-3
	Maris Bead-3/S1
	Fuego-4
	Fuego-4/S1
	Granit-1
	Granit-1/S1
	Albus-1
	Kasztelan-1
	ig101760-3 (BPL1)
	ig101760-3/S1 (BPL1)
	ig101769-1/S1 (BPL10)
	ig101769-1/S2 (BPL10)
	ig101770-1/S1 (BPL11)
	ig101770-1/S2 (BPL11)
	ig101771-4/S1B1 (BPL12)
	ig101771-3 (BPL12)
	ig101780-3/S1 (BPL21)
	ig101782-3 (BPL23)
	ig101782-3/S1 (BPL23)
	ig101786-2/S1 (BPL27)
	ig101786-2/S2 (BPL27)
	ig101799-1/S1 (BPL40)
	ig101799-1/S3 (BPL40)
	ig101822-2/S1
	ig101822-2/S2 (BPL63)
	ig101942-3 (BPL183)
	ig101942-3/S1 (BPL183)
	CGN07715 cf-3-2 (60354-9)
	CGN07715 cf-3-2 (60354-9)-1/S1A1
	FAB4000104-13-1
	FAB4000104-13-1/S1
	Vf6-1/S1
	Vf136-1/S1
	INRA29H-1/S1
	ig11656-6/S1
	ig11687-7/S1
	ig11695-5/S1
	NV153_1DW_S3A2	T:T
	NV639_1_HEDIN	C:C
	NV643_3_S2	T:T
	NV644_1_KASZTEL	T:T
	NV648_2_S3B2_7	T:C
	NV656_3_S2A2_9	T:T
	NV657_26	T:T
	NV658_2_CGN0771	T:T
	NV662_1_VF136	T:T
	NV713_1_COTEDOR	T:T
	NV714_1_HIVERNA	C:C
	NV715_1_WEBO	C:C
	NV716_1_WIBO	T:T
	NV717_1_L79_79	T:T
	NV718_1_L977_88	T:T
	NV719_1_L979_S1	T:T
	NV720_1_BOURDON	T:T
	NV721_1_ARRISOT	T:T
	NV722_1_BANNER	T:T
	NV723_1_BULLDOG	T:T
	NV724_1_PIETRAL	T:T
	NV725_1_GIZA3_2	T:T
	NV726_1_GIZA402	T:T
	NV727_1_BPL4628	T:T
	NV728_1_TW	T:T
	NV729_1_VF6	T:T
	NV730_1_I4347_4	T:T
	NV731_1_I4347_3	T:T
	NV732_1_BPL710	T:T
	NV733_1_NA112	T:T
	NV734_1_ILB938	T:T
	NV735_1_MELODIE	T:T
	NV736_1_AURORA	T:T

Copyright | Accessibility © NIAB
NIAB operates a quality management system accredited to ISO 9001: 2008 for all its activities.

NIAB - National Institute of Agricultural Botany

Assay information: Vf_Mt8g091280_001